diff options
| -rw-r--r-- | ml_exp/c_matrix.py | 33 |
1 files changed, 0 insertions, 33 deletions
diff --git a/ml_exp/c_matrix.py b/ml_exp/c_matrix.py index 00034a660..ac942d473 100644 --- a/ml_exp/c_matrix.py +++ b/ml_exp/c_matrix.py @@ -20,11 +20,9 @@ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. """ -import time import math import numpy as np from numpy.linalg import eig -from ml_exp.misc import printc def c_matrix(mol_data, @@ -146,34 +144,3 @@ def c_matrix(mol_data, return np.sort(eig(cm)[0])[::-1] else: return cm - - -def c_matrix_multiple(mol_data, - nc_data, - pipe=None, - max_len=25, - as_eig=True, - bohr_radius_units=False): - """ - Calculates the Coulomb Matrix of multiple molecules. - mol_data: molecule data, matrix of atom coordinates. - nc_data: nuclear charge data, array of atom data. - pipe: for multiprocessing purposes. Sends the data calculated - through a pipe. - max_len: maximum amount of atoms in molecule. - as_eig: if data should be returned as matrix or array of eigenvalues. - bohr_radius_units: if units should be in bohr's radius units. - """ - printc('Coulomb Matrices calculation started.', 'CYAN') - tic = time.perf_counter() - - cm_data = np.array([c_matrix(mol, nc, max_len, as_eig, bohr_radius_units) - for mol, nc in zip(mol_data, nc_data)]) - - toc = time.perf_counter() - printc('\tCM calculation took {:.4f} seconds.'.format(toc - tic), 'GREEN') - - if pipe: - pipe.send(cm_data) - - return cm_data |