From d0635e04971e3ee3b951d1c74c43b755b0096bb2 Mon Sep 17 00:00:00 2001
From: David Luevano <55825613+luevano@users.noreply.github.com>
Date: Thu, 12 Dec 2019 03:51:16 -0700
Subject: Add function for multiple molecules and fix spelling

---
 c_matrix.py  | 21 ++++++++++++++++++++-
 lj_matrix.py | 21 ++++++++++++++++++++-
 2 files changed, 40 insertions(+), 2 deletions(-)

diff --git a/c_matrix.py b/c_matrix.py
index dff638bc5..f6f18976e 100644
--- a/c_matrix.py
+++ b/c_matrix.py
@@ -31,7 +31,7 @@ def c_matrix(mol_data,
              as_eig=False,
              bohr_radius_units=False):
     """
-    Creates the coulomb matrix from the molecule data given.
+    Creates the Coulomb Matrix from the molecule data given.
     mol_data: molecule data, matrix of atom coordinates.
     nc_data: nuclear charge data, array of atom data.
     max_len: maximum amount of atoms in molecule.
@@ -144,3 +144,22 @@ def c_matrix(mol_data,
                 return np.sort(eig(cm)[0])[::-1]
             else:
                 return cm
+
+
+def c_matrix_multiple(mol_data,
+                      nc_data,
+                      max_len=25,
+                      as_eig=False,
+                      bohr_radius_units=False):
+    """
+    Calculates the Coulomb Matrix of multiple molecules.
+    mol_data: molecule data, matrix of atom coordinates.
+    nc_data: nuclear charge data, array of atom data.
+    max_len: maximum amount of atoms in molecule.
+    as_eig: if data should be returned as matrix or array of eigenvalues.
+    bohr_radius_units: if units should be in bohr's radius units.
+    """
+    cm_data = np.array([c_matrix(mol, nc, max_len, as_eig, bohr_radius_units)
+                       for mol, nc in zip(mol_data, nc_data)])
+
+    return cm_data
diff --git a/lj_matrix.py b/lj_matrix.py
index c99982731..40ff30d3d 100644
--- a/lj_matrix.py
+++ b/lj_matrix.py
@@ -31,7 +31,7 @@ def lj_matrix(mol_data,
               as_eig=False,
               bohr_radius_units=False):
     """
-    Creates the coulomb matrix from the molecule data given.
+    Creates the Lennard-Jones Matrix from the molecule data given.
     mol_data: molecule data, matrix of atom coordinates.
     nc_data: nuclear charge data, array of atom data.
     max_len: maximum amount of atoms in molecule.
@@ -162,3 +162,22 @@ def lj_matrix(mol_data,
                 return np.sort(eig(lj)[0])[::-1]
             else:
                 return lj
+
+
+def c_matrix_multiple(mol_data,
+                      nc_data,
+                      max_len=25,
+                      as_eig=False,
+                      bohr_radius_units=False):
+    """
+    Calculates the Lennard-Jones Matrix of multiple molecules.
+    mol_data: molecule data, matrix of atom coordinates.
+    nc_data: nuclear charge data, array of atom data.
+    max_len: maximum amount of atoms in molecule.
+    as_eig: if data should be returned as matrix or array of eigenvalues.
+    bohr_radius_units: if units should be in bohr's radius units.
+    """
+    ljm_data = np.array([lj_matrix(mol, nc, max_len, as_eig, bohr_radius_units)
+                        for mol, nc in zip(mol_data, nc_data)])
+
+    return ljm_data
-- 
cgit v1.2.3-54-g00ecf