From 4a3f602aab73bb0304a237ddca5d9f3fa8867001 Mon Sep 17 00:00:00 2001
From: David Luevano Alvarado <55825613+luevano@users.noreply.github.com>
Date: Sat, 29 Feb 2020 14:07:24 -0700
Subject: Fix bugs

---
 ml_exp/do_ml.py           | 4 ++--
 ml_exp/representations.py | 4 +++-
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/ml_exp/do_ml.py b/ml_exp/do_ml.py
index 04f8abe87..5054b2b06 100644
--- a/ml_exp/do_ml.py
+++ b/ml_exp/do_ml.py
@@ -225,7 +225,7 @@ def do_ml(db_path='data',
                                       test_size=test_size,
                                       sigma=sigma,
                                       opt=opt,
-                                      identifier='CM',
+                                      identifier='AM',
                                       show_msgs=show_msgs)
     if 'BOB' in identifiers:
         bob_mae, bob_tictoc = simple_ml(bob_data,
@@ -234,7 +234,7 @@ def do_ml(db_path='data',
                                         test_size=test_size,
                                         sigma=sigma,
                                         opt=opt,
-                                        identifier='CM',
+                                        identifier='BOB',
                                         show_msgs=show_msgs)
 
     # End of program
diff --git a/ml_exp/representations.py b/ml_exp/representations.py
index 31259c79c..6b5d26bcb 100644
--- a/ml_exp/representations.py
+++ b/ml_exp/representations.py
@@ -358,10 +358,12 @@ generated as the vector of eigenvalues, try (re-)generating the CM.')
             for j, num in enumerate(sorted(bags[checker[1]][1:])[::-1]):
                 # Use c_i as the index for bob if the zero padding should
                 # be at the end of the vector instead of between each bond.
-                bob[i*size + j] = num
+                # bob[i*size + j] = num
+                bob[c_i] = num
                 c_i += 1
         else:
             print(f'Error. Bond {bond} from bond list coudn\'t be found',
                   'in the bags list. This could be a case where the atom',
                   'is only present oncce in the molecule.')
+
     return bob
-- 
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